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TDOC-518
Replace Posda VMs (for CADR)
Continued cleanup of TCIA site to reflect CADR changes - Update Data Usage Policy, Privacy, Disclaimer pages See Description
Link to IDC documentation
Update TCIA API page to remove “REST” from title
Document everywhere NBIA is part of the existing TCIA workflow
On searches that have multiple pages of results, fix issues with search results getting re-ordered any time a new page is selected. See description
Discuss Themes for Q2-2024
Privacy and Security policy for European datasets
Investigate and make a proposal for supporting command-line access for public collections with Aspera downloads
Privacy and Security policy for European datasets
Privacy and Security policy for European datasets
Complete all compliance and training to retrieve TCIA data back from a CADR for review during the submission process. See Description
Continue Collaboration with CRDCs hosting TCIA data Provide input on imaging use cases and collaborate with CRDC on feature requests. See Description
Stretch goal: ETL All current dataset/recordset releases into the release module (for CADR)
Stretch goal: Explore handing multiframe objects
Stretch goal: Add a volume list for SEG / SEG list for volume for quick overlays in Mirabelle.
Add date shifting for slide metadata for pathology curation
Add type/status filtering to mask and mask review
Improve Mirabelle error messaging (for Apollo tasks)
Create script to delete activities that have already been published in TCIA (for Apollo )
Release Module deployment, testing, integration, and training (for CADR) Deploy the Release Module to production Solicit feedback and update accordingly Document and Integrate into workflows Provide training for curators
Complete IDC, CRDC and GC pipelines for the Release Module (for CADR)
Integrate NBIA QC tool functionality into Release Module & Mirabelle (for CADR)
Add geometry checker to Posda (similar to Andrey’s)
Complete all compliance and training to retrieve TCIA data back from a CADR for review during the submission process. See Description
Continue Collaboration with CRDCs hosting TCIA data Provide input on imaging use cases and collaborate with CRDC on feature requests. See Description
Investigate IDC APIs and document what is needed to populate Collection Manager
Stretch Goals: Curator updates to Cancer type, Cancer location fields to align with the new NCI Imaging Model definitions
Train new staff and incorporate as new Curation Manager, establish a queue of her own collections?
Talk to PIs and figure out next steps for annotation display (Ryan coding to modify UI to allow more granular control of different annotation ROIs)
Submit Posda 1.1 to VA for approval and deploy
Add additional messaging to dciodvfy based on Geri’s macro and deploy to production.
Develop a workflow process to sync private tag knowledge base between APOLLO VA Posda and TCIA Posda
Update simplified PHI report using agreed criteria and deploy to Posda
Integrate DICOM SEG overlay into Posda curation workflow and document its usage.
Create communication bridge between Posda and PathDB
Support NBIA for development and integration of NBIA rel into TCIA Prod 4. Provide input about your priorities for pending releases (See Description for details)
Support NBIA for development and integration of NBIA releases into TCIA Production 3. Participate in NBIA meetings and address JIRA issues as assigned
Support NBIA for development and integration of NBIA releases into TCIA Production 2. Test and deploy any new releases
Support NBIA for development and integration of NBIA releases into TCIA Production 1. Update release flag dates in NBIA for legacy collections (where feasible) as outlined in the spreadsheet Kirk created
Renew k8s cluster Certificates 2023-10-05
Provide input about your priorities for pending releases
Test and deploy any new releases
Complete NLST API configuration with Kong so NBIA team can document the base URL in our API guide
Provide a written summary of how access control should work for Keycloak, including the QC and UAT tools
Key issue: in the requirements are we going to respect the DICOM hierarchy for displaying/organizing data or should we prioritize connections with sub-collection?
Respond to ATO by May 27
Final Report
Monthly Status Report
DICOM Validation script expanded for the use with radiotherapy DICOM objects including software and end-user documentation
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data-icon=\"/images/icons/status_generic.gif\" value=\"10303\" title=\"Waiting for Customer\" data-simple-status=\"{"id":"10303","name":"Waiting for Customer","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Waiting for Customer</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10304\" title=\"Waiting for Triage\" data-simple-status=\"{"id":"10304","name":"Waiting for Triage","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Waiting for Triage</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/information.png\" value=\"10305\" title=\"In Review\" data-simple-status=\"{"id":"10305","name":"In Review","description":"","iconUrl":"/images/icons/statuses/information.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">In Review</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10306\" title=\"Under Review\" data-simple-status=\"{"id":"10306","name":"Under Review","description":"","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Under Review</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10307\" title=\"Released\" data-simple-status=\"{"id":"10307","name":"Released","description":"Subtasks include:\\nConfirm all images are \\"Visible\\"\\nUpdate Private Wiki\\nClose TCS issue\\nTest with non-admin login\\nSocial Media: Facebook, LinkedIn, Twitter\\nupdate landing page with \\"Public\\"\\nConfirm public-facing wiki page is accurate\\nConfirm DOI links work","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Released</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10308\" title=\"Cancelled\" data-simple-status=\"{"id":"10308","name":"Cancelled","description":"","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Cancelled</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10309\" title=\"Rejected\" data-simple-status=\"{"id":"10309","name":"Rejected","description":"","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Rejected</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10406\" title=\"Declined\" data-simple-status=\"{"id":"10406","name":"Declined","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Declined</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10407\" title=\"Awaiting approval\" data-simple-status=\"{"id":"10407","name":"Awaiting approval","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":1,"key":"undefined","colorName":"default"}}\">Awaiting approval</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10408\" title=\"Awaiting implementation\" data-simple-status=\"{"id":"10408","name":"Awaiting implementation","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":1,"key":"undefined","colorName":"default"}}\">Awaiting implementation</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10409\" title=\"Review/Test\" data-simple-status=\"{"id":"10409","name":"Review/Test","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Review/Test</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10410\" title=\"Requirements\" data-simple-status=\"{"id":"10410","name":"Requirements","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Requirements</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10411\" title=\"Archive\" data-simple-status=\"{"id":"10411","name":"Archive","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Archive</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10507\" title=\"Refinement\" data-simple-status=\"{"id":"10507","name":"Refinement","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Refinement</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10508\" title=\"Next\" data-simple-status=\"{"id":"10508","name":"Next","description":"Highest Priority work items that are understood well enough for work to beging","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Next</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10509\" title=\"Testing\" data-simple-status=\"{"id":"10509","name":"Testing","description":"","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Testing</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10510\" title=\"Review\" data-simple-status=\"{"id":"10510","name":"Review","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Review</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10606\" title=\"Approved\" data-simple-status=\"{"id":"10606","name":"Approved","description":"","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Approved</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10607\" title=\"Green Light\" data-simple-status=\"{"id":"10607","name":"Green Light","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Green Light</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10706\" title=\"Change Control\" data-simple-status=\"{"id":"10706","name":"Change Control","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Change Control</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10806\" title=\"Pending\" data-simple-status=\"{"id":"10806","name":"Pending","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Pending</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10807\" title=\"Canceled\" data-simple-status=\"{"id":"10807","name":"Canceled","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Canceled</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10808\" title=\"Escalated\" data-simple-status=\"{"id":"10808","name":"Escalated","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Escalated</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10809\" title=\"Waiting for approval\" data-simple-status=\"{"id":"10809","name":"Waiting for approval","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Waiting for approval</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10810\" title=\"Awaiting CAB approval\" data-simple-status=\"{"id":"10810","name":"Awaiting CAB approval","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Awaiting CAB approval</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10811\" title=\"Planning\" data-simple-status=\"{"id":"10811","name":"Planning","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Planning</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10812\" title=\"Implementing\" data-simple-status=\"{"id":"10812","name":"Implementing","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Implementing</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10813\" title=\"Peer review / change manager approval\" data-simple-status=\"{"id":"10813","name":"Peer review / change manager approval","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Peer review / change manager approval</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10814\" title=\"Work in progress\" data-simple-status=\"{"id":"10814","name":"Work in progress","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Work in progress</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10815\" title=\"Completed\" data-simple-status=\"{"id":"10815","name":"Completed","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Completed</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10816\" title=\"Under investigation\" data-simple-status=\"{"id":"10816","name":"Under investigation","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Under investigation</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10907\" title=\"Waiting for Release\" data-simple-status=\"{"id":"10907","name":"Waiting for Release","description":"","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Waiting for Release</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10908\" title=\"Stuck\" data-simple-status=\"{"id":"10908","name":"Stuck","description":"This status is managed internally by Jira Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Stuck</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"11006\" title=\"On Hold\" data-simple-status=\"{"id":"11006","name":"On Hold","description":"","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">On Hold</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"11106\" title=\"Ready For Prod\" data-simple-status=\"{"id":"11106","name":"Ready For Prod","description":"This status is managed internally by Jira Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Ready For Prod</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"11206\" title=\"Paused\" data-simple-status=\"{"id":"11206","name":"Paused","description":"This status is managed internally by Jira Software","iconUrl":"/","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Paused</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"11306\" title=\"In Testing\" data-simple-status=\"{"id":"11306","name":"In Testing","description":"This status is managed internally by Jira Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">In Testing</option>\n </optgroup>\n</select>\n </div>\n \n","validSearcher":true,"isShown":true}}}
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0.3
0