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TDOC-358
Support Keycloak integration into NBIA
Create a 10 year anniversary banner to replace the COVID banner on the homepage
APOLLO 2. Prepare Risk Management Framework (RMF) Authority To Operate (ATO) documents
POSDA 1. Complete 3 documents for Posda DoD review https://drive.google.com/drive/folders/1_l1YjzsDcepRETQH4KcwWvXiDIv72tEQ?usp=sharing
Start representing collection short names consistently on the landing page tables and wiki page titles for all datasets (include pathology and analysis results)
Create Datacite API wiki page under the TCIA API section of the site detailing what fields we populate with collection metadata (based on Kirk’s analysis from Q3) and how to access this info
Create a TCIA virtual meeting background to use with Zoom/Webex
About us page for FNLCR o John/Justin will provide content, need you to add it to the menus/Wordpress, including syncing menus across all site components
Create Artificial Intelligence page linked to Research Projects Tab https://wiki.cancerimagingarchive.net/x/TAGJAw and use as basis for publishing a paper on this topic
Pathology - Survey all pathology datasets to see what can be loaded into pathDB/Eaglescope this quarter (complete survey and make proposal spreadsheet by 7/1)
~4 meetings with 4th quarter development teams: Clunie (DCIODVFY improvements)
~4 meetings with 4th quarter development teams: Glendor (adding AI modules to CTP for metadata/pixel cleaning)
~4 meetings with 4th quarter development teams: Medexprim (improving CTP usability, quarantine handling, etc)
Add Aspera download metrics by collection to monthly reports
Add Aspera and API download stats into Data Usage Stats
Q4-2021 - August Monthly Report
Add Aspera download metrics by collection to monthly reports
Add Aspera and API download stats into Data Usage Stats
Q4-2021 - July Monthly Report
Publish NLST (TO #2)
Publish MIDI Final Report
Publish N3C Final Report
TO #1 Defacing Pipeline Final ReportTADMIN-777
Remove 'Count of migrated data' from Tableau Chart
New Tableau Chart for Aspera Data
Add Aspera download metrics by collection to monthly reports
Add Aspera and API download stats into Data Usage Stats
Q4-2021 - June Monthly Report
Biobank Satellite curation team procedures (Not a Milestone Deliverable) see description
Adoption of PRISM tools (Not a Deliverable) Notify us of available deployed Data Analysis Center PRISM tools (Only PRISM-related themes will be requests to integrate existing DACs you’ve deployed into the main TCIA tech stack if stable
Biobank 2. Pathology workflow finalized and documented for AWS transfers with Van Andel and spreadsheet from Biobank (Jeff Mclean)
Biobank 1. Post bolus of radiology and pathology with cut-off at July 1 )
APOLLO 1. Complete curation and assessment of GYN-COE resubmission of APOLLO-2 data (dependent upon receiving data from Inova)
Integrate CTP to Posda API in CTP Wizard
NBIA 1. Test NBIA 7.8 release candidate and provide feedback
Collection Manager 1. TCIA will review any prototype releases shared from PRISM.
Metrics: o Fix tableau graph that shows which collections/modality/etc were clicked how often (broken by NBIA upgrades?)
Metrics o Continue to have Julie explore integrating Aspera downloads metrics to https://www.cancerimagingarchive.net/stats  Hold a couple meetings to refine use cases/requirements
Create & implement process to have Izzy help you add collection <-> publication linkages in Endnote
Pathology - Create cost estimate for formally taking over TCGA pathology hosting from GDC
Pathology - Deliver agreed upon collections in PathDB/Eaglescope by end of quarter
TO #1 extension - implement defacing pipeline
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data-simple-status=\"{"id":"10202","name":"Backlog","description":"","iconUrl":"/images/icons/subtask.gif","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Backlog</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/subtask.gif\" value=\"10203\" title=\"Selected for Development\" data-simple-status=\"{"id":"10203","name":"Selected for Development","description":"","iconUrl":"/images/icons/subtask.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Selected for Development</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10302\" title=\"Waiting for Support\" data-simple-status=\"{"id":"10302","name":"Waiting for Support","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Waiting for Support</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10303\" title=\"Waiting for Customer\" data-simple-status=\"{"id":"10303","name":"Waiting for Customer","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Waiting for Customer</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10304\" title=\"Waiting for Triage\" data-simple-status=\"{"id":"10304","name":"Waiting for Triage","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Waiting for Triage</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/information.png\" value=\"10305\" title=\"In Review\" data-simple-status=\"{"id":"10305","name":"In Review","description":"","iconUrl":"/images/icons/statuses/information.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">In Review</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10306\" title=\"Under Review\" data-simple-status=\"{"id":"10306","name":"Under Review","description":"","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Under Review</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10307\" title=\"Released\" data-simple-status=\"{"id":"10307","name":"Released","description":"Subtasks include:\\nConfirm all images are \\"Visible\\"\\nUpdate Private Wiki\\nClose TCS issue\\nTest with non-admin login\\nSocial Media: Facebook, LinkedIn, Twitter\\nupdate landing page with \\"Public\\"\\nConfirm public-facing wiki page is accurate\\nConfirm DOI links work","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Released</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10308\" title=\"Cancelled\" data-simple-status=\"{"id":"10308","name":"Cancelled","description":"","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Cancelled</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10309\" title=\"Rejected\" data-simple-status=\"{"id":"10309","name":"Rejected","description":"","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Rejected</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10406\" title=\"Declined\" data-simple-status=\"{"id":"10406","name":"Declined","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Declined</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10407\" title=\"Awaiting approval\" data-simple-status=\"{"id":"10407","name":"Awaiting approval","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":1,"key":"undefined","colorName":"default"}}\">Awaiting approval</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10408\" title=\"Awaiting implementation\" data-simple-status=\"{"id":"10408","name":"Awaiting implementation","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":1,"key":"undefined","colorName":"default"}}\">Awaiting implementation</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10409\" title=\"Review/Test\" data-simple-status=\"{"id":"10409","name":"Review/Test","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Review/Test</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10410\" title=\"Requirements\" data-simple-status=\"{"id":"10410","name":"Requirements","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Requirements</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10411\" title=\"Archive\" data-simple-status=\"{"id":"10411","name":"Archive","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Archive</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10507\" title=\"Refinement\" data-simple-status=\"{"id":"10507","name":"Refinement","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Refinement</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10508\" title=\"Next\" data-simple-status=\"{"id":"10508","name":"Next","description":"Highest Priority work items that are understood well enough for work to beging","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Next</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10509\" title=\"Testing\" data-simple-status=\"{"id":"10509","name":"Testing","description":"","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Testing</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10510\" title=\"Review\" data-simple-status=\"{"id":"10510","name":"Review","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Review</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10606\" title=\"Approved\" data-simple-status=\"{"id":"10606","name":"Approved","description":"","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Approved</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10607\" title=\"Green Light\" data-simple-status=\"{"id":"10607","name":"Green Light","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Green Light</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10706\" title=\"Change Control\" data-simple-status=\"{"id":"10706","name":"Change Control","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Change Control</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10806\" title=\"Pending\" data-simple-status=\"{"id":"10806","name":"Pending","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Pending</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10807\" title=\"Canceled\" data-simple-status=\"{"id":"10807","name":"Canceled","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Canceled</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10808\" title=\"Escalated\" data-simple-status=\"{"id":"10808","name":"Escalated","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Escalated</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10809\" title=\"Waiting for approval\" data-simple-status=\"{"id":"10809","name":"Waiting for approval","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Waiting for approval</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10810\" title=\"Awaiting CAB approval\" data-simple-status=\"{"id":"10810","name":"Awaiting CAB approval","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Awaiting CAB approval</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10811\" title=\"Planning\" data-simple-status=\"{"id":"10811","name":"Planning","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Planning</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10812\" title=\"Implementing\" data-simple-status=\"{"id":"10812","name":"Implementing","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Implementing</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10813\" title=\"Peer review / change manager approval\" data-simple-status=\"{"id":"10813","name":"Peer review / change manager approval","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Peer review / change manager approval</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10814\" title=\"Work in progress\" data-simple-status=\"{"id":"10814","name":"Work in progress","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Work in progress</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10815\" title=\"Completed\" data-simple-status=\"{"id":"10815","name":"Completed","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Completed</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10816\" title=\"Under investigation\" data-simple-status=\"{"id":"10816","name":"Under investigation","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Under investigation</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10907\" title=\"Waiting for Release\" data-simple-status=\"{"id":"10907","name":"Waiting for Release","description":"","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Waiting for Release</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10908\" title=\"Stuck\" data-simple-status=\"{"id":"10908","name":"Stuck","description":"This status is managed internally by Jira Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Stuck</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"11006\" title=\"On Hold\" data-simple-status=\"{"id":"11006","name":"On Hold","description":"","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">On Hold</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"11106\" title=\"Ready For Prod\" data-simple-status=\"{"id":"11106","name":"Ready For Prod","description":"This status is managed internally by Jira Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Ready For Prod</option>\n </optgroup>\n</select>\n </div>\n \n","validSearcher":true,"isShown":true},"labels":{"name":"Label","viewHtml":" <div class=\"searcherValue\">\n \n <label class=\"fieldLabel\" for=\"fieldlabels\">Label:</label><span id=\"fieldlabels\" class=\"fieldValue\">\n \n Q4-2021\n</span></div>\n","editHtml":"\n <div class=\"field-group aui-field-labels\" >\n <label for=\"searcher-labels\">Labels</label> <select class=\"js-label-checkboxmultiselect\" multiple=\"multiple\" id=\"searcher-labels\" name=\"labels\" data-placeholder-text=\"Find Labels...\">\n <option value=\"Q4-2021\" title=\"Q4-2021\" selected=\"selected\">Q4-2021</option>\n </select>\n </div>\n \n","jql":"labels = Q4-2021","validSearcher":true,"isShown":true}}}
[{"id":-1,"name":"My open issues","jql":"assignee = currentUser() AND resolution = Unresolved order by updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":true},{"id":-2,"name":"Reported by me","jql":"reporter = currentUser() order by created DESC","isSystem":true,"sharePermissions":[],"requiresLogin":true},{"id":-4,"name":"All issues","jql":"order by created DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-5,"name":"Open issues","jql":"resolution = Unresolved order by priority DESC,updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-9,"name":"Done issues","jql":"statusCategory = Done order by updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-3,"name":"Viewed recently","jql":"issuekey in issueHistory() order by lastViewed DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-6,"name":"Created recently","jql":"created >= -1w order by created DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-7,"name":"Resolved recently","jql":"resolutiondate >= -1w order by updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-8,"name":"Updated recently","jql":"updated >= -1w order by updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false}]
0.3
0