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TDOC-518
Replace Posda VMs (for CADR)
Continued cleanup of TCIA site to reflect CADR changes - Update Data Usage Policy, Privacy, Disclaimer pages See Description
How do we support finding non DICOM data in AWS? (IDC uses Big Query and Parquet files) (Stretch goal)-White paper
How do we move towards a single API? (Stretch goal) - White paper
Review and document all system operating levels and software dependencies
Gather, organize, and centralize the existing SOPs that are still operational. The review of the SOPs, in conjunction with the drafting of the SSP. The POAM may suggest the need to update existing SOPs or create new SOP See Description
Develop Software Development Life Cycle Guidelines for TCIA that align with UAMS security practices
Data Explorer - Hold meetings to map out any actionable plans
Stretch goal: ETL All current dataset/recordset releases into the release module (for CADR)
Release Module deployment, testing, integration, and training (for CADR) Deploy the Release Module to production Solicit feedback and update accordingly Document and Integrate into workflows Provide training for curators
Complete IDC, CRDC and GC pipelines for the Release Module (for CADR)
Integrate NBIA QC tool functionality into Release Module & Mirabelle (for CADR)
Report on all code dependencies to enable CVE tracking going forward. (Github automatically does this somewhat, but it's a little unreliable).
Frontend library updates (web browser, js) for eaglescope and caMicroscope
Backend code dependency updates (node, python)
Update/harden container base images for the caMicroscope components (and paths, which will require cooperation with Erich)
Make sure the containers run in a secure context with limited permissions
Deploy/test out newer http2 protocols
Test upgrades end-to-end in staging for PathDB and downloaders/uploaders.
Refactor PathDB code for compatibility with new stacks; apply security patches.
Update container base images and all app dependencies to current stable releases.
Upgrade base OS on hosts to latest LTS (e.g., Ubuntu 24.04/RHEL 9).
Inventory current OS versions on all container hosts and software versions in PathDB/histopathology portal containers.
Inventory current OS versions on all container hosts and software versions in PathDB/histopathology portal containers (Stony Brook)
Replace outdated Load Balancer with F5 Device and implement routing rules and ensure best practices for security
Provide required software maintenance and upgrades. To ensure continued support and security measures, it is crucial to update the code to work with the latest releases of underlying technologies. See Description
Initial Draft of a DBMI Plan of Action and Milestones (POAM) for addressing deficiencies identified while creating the SSP. See Description
Initial Draft of a DBMI Software Quality Assurance Plan (SQAP), referenced by the SSP. See Description
Initial Draft of DBMI System Security Plan (SSP), patterned after NIST SP 800-171. See Description
Create a draft container/VM map, outlining which TCIA services run where - See Description
Upgrade underlying technologies for all tools in the TCIA infrastructure to ensure continued application of security patches. See Description
Update user-facing data portals to remove references to user accounts See Description
TCIA-curated controlled access datasets - Implement process to push data from Posda to GC and CTDC using their python client - Dup
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From here issues are either marked assigned or resolved.","iconUrl":"/images/icons/statuses/reopened.png","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Reopened</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/resolved.png\" value=\"5\" title=\"Resolved\" data-simple-status=\"{"id":"5","name":"Resolved","description":"A resolution has been taken, and it is awaiting verification by reporter. From here issues are either reopened, or are closed.","iconUrl":"/images/icons/statuses/resolved.png","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Resolved</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/closed.png\" value=\"6\" title=\"Closed\" data-simple-status=\"{"id":"6","name":"Closed","description":"The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.","iconUrl":"/images/icons/statuses/closed.png","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Closed</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/closed.png\" value=\"10008\" title=\"Done\" data-simple-status=\"{"id":"10008","name":"Done","description":"","iconUrl":"/images/icons/statuses/closed.png","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Done</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/open.png\" value=\"10009\" title=\"To Do\" data-simple-status=\"{"id":"10009","name":"To Do","description":"","iconUrl":"/images/icons/statuses/open.png","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">To Do</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/subtask.gif\" value=\"10202\" title=\"Backlog\" data-simple-status=\"{"id":"10202","name":"Backlog","description":"","iconUrl":"/images/icons/subtask.gif","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Backlog</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/subtask.gif\" value=\"10203\" title=\"Selected for Development\" data-simple-status=\"{"id":"10203","name":"Selected for Development","description":"","iconUrl":"/images/icons/subtask.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Selected for Development</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10302\" title=\"Waiting for Support\" data-simple-status=\"{"id":"10302","name":"Waiting for Support","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Waiting for Support</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10303\" title=\"Waiting for Customer\" data-simple-status=\"{"id":"10303","name":"Waiting for Customer","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Waiting for Customer</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10304\" title=\"Waiting for Triage\" data-simple-status=\"{"id":"10304","name":"Waiting for Triage","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Waiting for Triage</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/information.png\" value=\"10305\" title=\"In Review\" data-simple-status=\"{"id":"10305","name":"In Review","description":"","iconUrl":"/images/icons/statuses/information.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">In Review</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10306\" title=\"Under Review\" data-simple-status=\"{"id":"10306","name":"Under Review","description":"","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Under Review</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10307\" title=\"Released\" data-simple-status=\"{"id":"10307","name":"Released","description":"Subtasks include:\\nConfirm all images are \\"Visible\\"\\nUpdate Private Wiki\\nClose TCS issue\\nTest with non-admin login\\nSocial Media: Facebook, LinkedIn, Twitter\\nupdate landing page with \\"Public\\"\\nConfirm public-facing wiki page is accurate\\nConfirm DOI links work","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Released</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10308\" title=\"Cancelled\" data-simple-status=\"{"id":"10308","name":"Cancelled","description":"","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Cancelled</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10309\" title=\"Rejected\" data-simple-status=\"{"id":"10309","name":"Rejected","description":"","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Rejected</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10406\" title=\"Declined\" data-simple-status=\"{"id":"10406","name":"Declined","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Declined</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10407\" title=\"Awaiting approval\" data-simple-status=\"{"id":"10407","name":"Awaiting approval","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":1,"key":"undefined","colorName":"default"}}\">Awaiting approval</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10408\" title=\"Awaiting implementation\" data-simple-status=\"{"id":"10408","name":"Awaiting implementation","description":"This was auto-generated by JIRA Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":1,"key":"undefined","colorName":"default"}}\">Awaiting implementation</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10409\" title=\"Review/Test\" data-simple-status=\"{"id":"10409","name":"Review/Test","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Review/Test</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10410\" title=\"Requirements\" data-simple-status=\"{"id":"10410","name":"Requirements","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Requirements</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10411\" title=\"Archive\" data-simple-status=\"{"id":"10411","name":"Archive","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Archive</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10507\" title=\"Refinement\" data-simple-status=\"{"id":"10507","name":"Refinement","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Refinement</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10508\" title=\"Next\" data-simple-status=\"{"id":"10508","name":"Next","description":"Highest Priority work items that are understood well enough for work to beging","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Next</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10509\" title=\"Testing\" data-simple-status=\"{"id":"10509","name":"Testing","description":"","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Testing</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10510\" title=\"Review\" data-simple-status=\"{"id":"10510","name":"Review","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Review</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10606\" title=\"Approved\" data-simple-status=\"{"id":"10606","name":"Approved","description":"","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Approved</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10607\" title=\"Green Light\" data-simple-status=\"{"id":"10607","name":"Green Light","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Green Light</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10706\" title=\"Change Control\" data-simple-status=\"{"id":"10706","name":"Change Control","description":"This status is managed internally by JIRA Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Change Control</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10806\" title=\"Pending\" data-simple-status=\"{"id":"10806","name":"Pending","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Pending</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10807\" title=\"Canceled\" data-simple-status=\"{"id":"10807","name":"Canceled","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Canceled</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10808\" title=\"Escalated\" data-simple-status=\"{"id":"10808","name":"Escalated","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Escalated</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10809\" title=\"Waiting for approval\" data-simple-status=\"{"id":"10809","name":"Waiting for approval","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Waiting for approval</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10810\" title=\"Awaiting CAB approval\" data-simple-status=\"{"id":"10810","name":"Awaiting CAB approval","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Awaiting CAB approval</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10811\" title=\"Planning\" data-simple-status=\"{"id":"10811","name":"Planning","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Planning</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10812\" title=\"Implementing\" data-simple-status=\"{"id":"10812","name":"Implementing","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Implementing</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10813\" title=\"Peer review / change manager approval\" data-simple-status=\"{"id":"10813","name":"Peer review / change manager approval","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Peer review / change manager approval</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10814\" title=\"Work in progress\" data-simple-status=\"{"id":"10814","name":"Work in progress","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Work in progress</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10815\" title=\"Completed\" data-simple-status=\"{"id":"10815","name":"Completed","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Completed</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/status_generic.gif\" value=\"10816\" title=\"Under investigation\" data-simple-status=\"{"id":"10816","name":"Under investigation","description":"This was auto-generated by Jira Service Desk during workflow import","iconUrl":"/images/icons/status_generic.gif","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Under investigation</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10907\" title=\"Waiting for Release\" data-simple-status=\"{"id":"10907","name":"Waiting for Release","description":"","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":3,"key":"done","colorName":"success"}}\">Waiting for Release</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"10908\" title=\"Stuck\" data-simple-status=\"{"id":"10908","name":"Stuck","description":"This status is managed internally by Jira Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Stuck</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"11006\" title=\"On Hold\" data-simple-status=\"{"id":"11006","name":"On Hold","description":"","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">On Hold</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"11106\" title=\"Ready For Prod\" data-simple-status=\"{"id":"11106","name":"Ready For Prod","description":"This status is managed internally by Jira Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">Ready For Prod</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"11206\" title=\"Paused\" data-simple-status=\"{"id":"11206","name":"Paused","description":"This status is managed internally by Jira Software","iconUrl":"/","statusCategory":{"id":2,"key":"new","colorName":"default"}}\">Paused</option>\n <option class=\"imagebacked\" data-icon=\"/\" value=\"11306\" title=\"In Testing\" data-simple-status=\"{"id":"11306","name":"In Testing","description":"This status is managed internally by Jira Software","iconUrl":"/","statusCategory":{"id":4,"key":"indeterminate","colorName":"inprogress"}}\">In Testing</option>\n </optgroup>\n</select>\n </div>\n \n","validSearcher":true,"isShown":true},"labels":{"name":"Label","viewHtml":" <div class=\"searcherValue\">\n \n <label class=\"fieldLabel\" for=\"fieldlabels\">Label:</label><span id=\"fieldlabels\" class=\"fieldValue\">\n \n Q4-2026-CADR-SF\n</span></div>\n","editHtml":"\n <div class=\"field-group aui-field-labels\" >\n <label for=\"searcher-labels\">Labels</label> <select class=\"js-label-checkboxmultiselect\" multiple=\"multiple\" id=\"searcher-labels\" name=\"labels\" data-placeholder-text=\"Find Labels...\">\n <option value=\"Q4-2026-CADR-SF\" title=\"Q4-2026-CADR-SF\" selected=\"selected\">Q4-2026-CADR-SF</option>\n </select>\n </div>\n \n","jql":"labels = Q4-2026-CADR-SF","validSearcher":true,"isShown":true}}}
[{"id":-1,"name":"My open issues","jql":"assignee = currentUser() AND resolution = Unresolved order by updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":true},{"id":-2,"name":"Reported by me","jql":"reporter = currentUser() order by created DESC","isSystem":true,"sharePermissions":[],"requiresLogin":true},{"id":-4,"name":"All issues","jql":"order by created DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-5,"name":"Open issues","jql":"resolution = Unresolved order by priority DESC,updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-9,"name":"Done issues","jql":"statusCategory = Done order by updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-3,"name":"Viewed recently","jql":"issuekey in issueHistory() order by lastViewed DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-6,"name":"Created recently","jql":"created >= -1w order by created DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-7,"name":"Resolved recently","jql":"resolutiondate >= -1w order by updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-8,"name":"Updated recently","jql":"updated >= -1w order by updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false}]
0.3
0